PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00395g06012.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family M-type_MADS
Protein Properties Length: 230aa    MW: 25857.6 Da    PI: 10.5617
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00395g06012.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.82.9e-231762449
                              -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                    SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                              +n+sn qvtfskRr+g++KKA+EL++LC++eva+++fs+  k+y +
  Peinf101Scf00395g06012.1 17 QNESNLQVTFSKRRAGLFKKASELCTLCGTEVAIVVFSPGKKVYSF 62
                              79******************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.2E-30665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.198666IPR002100Transcription factor, MADS-box
CDDcd002653.82E-32775No hitNo description
SuperFamilySSF554551.31E-26790IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-18828IPR002100Transcription factor, MADS-box
PfamPF003196.9E-251562IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-182843IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-184364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009960Biological Processendosperm development
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MARKSKGRQK VDMVKMQNES NLQVTFSKRR AGLFKKASEL CTLCGTEVAI VVFSPGKKVY  60
SFGHPCVDSV VDRYLARNPP PNINGHNQLI EAHRNASVRE LNMELTNTER ILEMERHRAE  120
DLKLRRRVNG HWWEAPIEEL NFFQLQQLKD AMEGLKKKVE REAQHQQMVT SNAFPFLNFG  180
SALVPLGARS SSSYGSNARP YGFQNKVLGL NLGAPFANRA SGSTSSVVPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3p57_J2e-16792186Myocyte-specific enhancer factor 2A
3p57_I2e-16792186Myocyte-specific enhancer factor 2A
3p57_D2e-16792186Myocyte-specific enhancer factor 2A
3p57_C2e-16792186Myocyte-specific enhancer factor 2A
3p57_B2e-16792186Myocyte-specific enhancer factor 2A
3p57_A2e-16792186Myocyte-specific enhancer factor 2A
3kov_J2e-16792186Myocyte-specific enhancer factor 2A
3kov_I2e-16792186Myocyte-specific enhancer factor 2A
3kov_B2e-16792186Myocyte-specific enhancer factor 2A
3kov_A2e-16792186Myocyte-specific enhancer factor 2A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009601691.11e-127PREDICTED: agamous-like MADS-box protein AGL62
SwissprotQ9FKK21e-62AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLK4B2P08e-97K4B2P0_SOLLC; Uncharacterized protein
STRINGSolyc01g106730.1.12e-96(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-64AGAMOUS-like 62